RNA-DECO: Publications

A systematic dissection of determinants and consequences of snoRNA-guided pseudouridylation of human mRNA

Nir, R., Hoernes, T. P., Muramatsu, H., Faserl, K., Karikó, K., Erlacher, M. D., Sas-Chen, A., Schwartz, S.

Nucleic Acids Research 50(9):4900-4916 (2022)

SLAMseq resolves the kinetics of maternal and zygotic gene expression in early zebrafish embryogenesis

Pooja Bhat, Luis E. Cabrera-Quio, Veronika A. Herzog, Nina Fasching, Andrea Pauli and Stefan L. Ameres

bioRxiv (2022) [preprint]

Synthesis of 4-thiouridines with prodrug functionalization for RNA metabolic labeling

Sarah Moreno, Melanie Brunner, Isabel Delazer, Dietmar Rieder, Alexandra Lusser and Ronald Micura

RSC Chem. Biol. 3, 447-455 (2022)

Structural basis for the context-specific action of the classic peptidyl transferase inhibitor chloramphenicol

Egor A. Syroegin, Laurin Flemmich, Dorota Klepacki, Nora Vazquez-Laslop, Ronald Micura and Yury S. Polikanov

Nat. Struct. Mol. Biol. 29, 152–161 (2022)

Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition

Xiaochen Xu, Michaela Egger, Hao Chen, Karolina Bartosik, Ronald Micura and Aiming Ren

Nucleic Acids Research 49, 12, 7139–7153 (2021)

Impact of 3-deazapurine nucleobases on RNA properties

Raphael Bereiter, Maximilian Himmelstoß, Eva Renard, Elisabeth Mairhofer, Michaela Egger, Kathrin Breuker, Christoph Kreutz, Eric Ennifar and Ronald Micura

Nucleic Acids Research 49, 8, 4281–4293 (2021)

A natural riboswitch scaffold with self-methylation activity

Laurin Flemmich, Sarah Heel, Sarah Moreno, Kathrin Breuker & Ronald Micura

Nature Communications 12:387 (2021)

A molecular network of conserved factors keeps ribosomes dormant in the egg

Leesch, K. F., Lorenzo-Orts, L., Pribitzer, C., Grishkovskaya, I., Matzinger, M., Roitinger, E., Belacic, K., Kandolf, S., Lin, T.-Y., Mechtler, K., Meinhart, A., Haselbach, D. and Pauli, A.

bioRxiv (2021) [preprint]

The ADAR1 editome reveals drivers of editing-specificity for ADAR1-isoforms

Renata Kleinova, Alina F. Leuchtenberger, Claudio Lo Giudice, Andrea Tanzer, Sophia Derdak, Ernesto Picardi and Michael F. Jantsch

bioRxiv (2021) [preprint]

Site-directed RNA editing: recent advances and open challenges

Hamid Mansouri Khosravi and Michael F. Jantsch

RNA Biology 18, S1, 41–50 (2021)

Transportin-1: A Nuclear Import Receptor with Moonlighting Functions

Allegra Mboukou, Vinod Rajendra, Renata Kleinova, Carine Tisné, Michael F. Jantsch and Pierre Barraud

Front. Mol. Biosci. 8, 638149 (2021)

CHD1 controls H3.3 incorporation in adult brain chromatin to maintain metabolic homeostasis and normal lifespan

Schoberleitner, I., Bauer, I., Huang, A., Andreyeva, E. N., Sebald, J., Pascher, K., Rieder, D., Brunner, M., Podhraski, V., Oemer, G., Cázarez-García, D., Rieder, L., Keller, M. A., Winkler, R., Fyodorov, D. V., Lusser, A.

Cell Reports 37, 109769 (2021)

Amine-to-Azide Conversion on Native RNA via Metal-Free Diazotransfer Opens New Avenues for RNA Manipulations

Olga A. Krasheninina, Julia Thaler, Matthias D. Erlacher and Ronald Micura

Angew. Chem. Int. Ed. 60, 6970–6974 (2021)

Zebrafish Ski7 tunes RNA levels during the oocyte-to-embryo transition

Luis Enrique Cabrera-Quio, Alexander Schleiffer, Karl Mechtler and Andrea Pauli

PLoS Genet 17(2): e1009390 (2021)

An I for an A: Dynamic Regulation of Adenosine Deamination-Mediated RNA Editing

Cornelia Vesely and Michael F. Jantsch

Genes 12, 1026 (2021)

A-to-I RNA Editing Uncovers Hidden Signals of Adaptive Genome Evolution in Animals

Niko Popitsch, Christian D. Huber, Ilana Buchumenski, Eli Eisenberg, Michael Jantsch, Arndt von Haeseler and Miguel Gallach

Genome Biol. Evol. 12(4), 345–357 (2020)

An internal deletion of ADAR rescued by MAVS deficiency leads to a minute phenotype

Prajakta Bajad, Florian Ebner, Fabian Amman, Brigitta Szabó, Utkarsh Kapoor, Greeshma Manjali, Alwine Hildebrandt, Michael P. Janisiw and Michael F. Jantsch

Nucleic Acids Research 48, 6, 3286–3303 (2020)

ADAR-deficiency perturbs the global splicing landscape in mouse tissues

Utkarsh Kapoor, Konstantin Licht, Fabian Amman, Tobias Jakobi, David Martin, Christoph Dieterich and Michael Jantsch

Genome Res. 30, 1107-1118 (2020)

Spt6 is a maintenance factor for centromeric CENP-A

Bobkov, G. O. M., Huang, A., van den Berg, S. J. W., Mitra, S., Anselm, E., Lazou, V., Schunter, S., Feederle, R., Imhof, A., Lusser, A., Jansen, L. E. T., Heun, P.

Nature Communications 11(1), 2919 (2020)

Thiouridine-to-Cytidine conversion sequencing (TUC-seq) to measure mRNA transcription and degradation rates

Lusser, A., Gasser, C., Trixl, L., Piatti, P., Delazer, I., Rieder, D., Bashin, J., Riml, C., Amort, T., and Micura, R

J. LaCava, and S. Vanacova, (eds.), The Eukaryotic RNA Exosome: Methods and Protocols, Methods in Molecular Biology (Clifton, NJ), 2062, 191–211 (2020)

Conformation of sister chromatids in the replicated human genome

Michael Mitter, Catherina Gasser, Zsuzsanna Takacs, Christoph C. H. Langer, Wen Tang, Gregor Jessberger, Charlie T. Beales, Eva Neuner,Stefan L. Ameres, Jan-Michael Peters, Anton Goloborodko, Ronald Micura and Daniel W. Gerlich

Nature 586, 139–144 (2020)

Thioguanosine Conversion Enables mRNA-Lifetime Evaluation by RNA Sequencing Using Double Metabolic Labeling (TUC-seq DUAL)

Catherina Gasser, Isabel Delazer , Eva Neuner , Katharina Pascher , Karl Brillet , Sarah Klotz , Lukas Trixl , Maximilian Himmelstoß , Eric Ennifar , Dietmar Rieder , Alexandra Lusser and Ronald Micura

Angew. Chem. Int. Ed. 59, 6881 – 6886 (2020)

Publications